FlyBase Archive server: last updated November 2004
FlyBase .. Aberrations .. Anatomy .. BLAST .. Genes .. Annotation/Sequences .. Gene Products .. Maps .. People .. References .. Stocks .. Transgenes/Transposons .|. Help .. Searches .. News .. Site

FlyBase Report

nuclear snRNA gene snRNA:U6:96Ab

D. melanogaster RNA-encoding gene small nuclear RNA U6 at 96Ab , abbreviated as snRNA:U6:96Ab , is reported here . It has also been known in FlyBase as snRNA-b and snRNA:U6. It encodes a product with putative pre-mRNA splicing factor activity putatively involved in nuclear mRNA splicing via U2-type spliceosome which is putatively a component of the snRNP U6 . It has been sequenced . It has been mapped cytologically to 96A . There are 5 recorded alleles : 4 in vitro constructs (none available from the public stock centers) and 1 wild-type. snRNA:U6:96Ab is discussed in 27 references (excluding sequence accessions), dated between 1981 and 2003. These include at least one study of wild-type function and 3 molecular studies .

Symbol snRNA:U6:96Ab
Class of gene nuclear_snRNA_gene
Full name small nuclear RNA U6 at 96Ab
Notes on cytogenetic map Experimentally determined: 96A
Cytogenetic map 96A (determined by in situ hybridization)  Cytoband:96A4 3R:20312159..20318425 Cytoband:96A5 3R:20318425..20343888 Cytoband:96A6 3R:20343888..20355028 Cytoband:96A7 3R:20355028..20380491 Cytoband:96A8 3R:20380491..20391631 Cytoband:96A9 3R:20391631..20425747 Cytoband:96A10 3R:20425747..20428234 Cytoband:96A11 3R:20428234..20434500 Gene:CG13617 3R:20331974..20334416 Gene:Pp1alpha-96A 3R:20334636..20337722 Gene:CG13618 3R:20341179..20343918 Gene:CG6607 3R:20344455..20346194 Gene:CG6631 3R:20347165..20352781 Gene:CG6643 3R:20361098..20372932 Gene:CG33343 3R:20402042..20418133 Gene:CG31312 3R:20429120..20429587 Gene:CG13620 3R:20431975..20440278 Gene:nAcRbeta-96A 3R:20325593..20331480 Gene:CG13622 3R:20338969..20339787 Gene:CG13623 3R:20346154..20346937 Gene:CG5789 3R:20352707..20360260 Gene:CG13624 3R:20375659..20399234 Gene:CG13625 3R:20399444..20401512 Gene model for snRNA:U6:96Ab-RA
Chromosome arm 3R
Available reports
Abridged reportSee also  Full report  |   Recent updates  |   Genome Annotation
Alleles (5)  |   Map locations  |   Gene Ontology  |   References (29)  |  
Similar genes & Sequences (5)  |   Synonyms (18)  |   Attributed data (25)
Synonyms  dU6;    K1;    snRNA4;    U6-2;    DU6-2;    U6 RNA;    U6;    U6snRNA;    U6-2 small nuclear RNA;    snRNA-b;    U6-96Ab;    snRNA:U6;    CR32867;    U6snRNA96Ab;    snRNA4;    snRNA6;    small nuclear RNA b;    small nuclear RNA U6
GO:Biological process nuclear mRNA splicing via U2-type spliceosome
GO:Cellular component snRNP U6
GO:Molecular function pre-mRNA splicing factor activity | inferred from sequence similarity
pre-mRNA splicing factor activity
Genomic sequence analysis FBan0032867
Rep. DNA sequence AE003748,  253272 bp, DNA, 2003
Scaffold AE003748
Sequence map 20373071..20373177   Get sequence [genbank format]  [fasta format]
DNA/RNA sequences AE003748;    M24606;    M26818;    X06669
External database links Fly GRID Interaction Data FlyGRID:FBgn0004189  
FlyBase ID FBgn0004189
Secondary ID FBgn0003455, FBgn0003939, FBgn0003940
Date 20 Aug 04
Useful aneuploid aberrations Deficiency: Df(3R)crb87-5 (inferred from cytology);    Duplication: Dp(3;3)M95A+13 (inferred from cytology)
Wild-type function     This sequence is not in the genome, but it is somewhat similar to U6 (82%). Could it just be U6 sequenced badly? E = 0.05 [S. Mount].
CG Symbol CR32867

Alleles        
SymbolAllele classPhenotype includesMutagenStocksMolec. info.
maxi----in vitro construct | other--yes
maxi.10----in vitro construct | other--yes
mut.PSEA----in vitro construct | site directed mutagenesis--yes
snRNA:U1.PSEA----in vitro construct | site directed mutagenesis--yes
+----------

 References (listed by author, ID, year)
Primary
  1. Arrigo et al., 1985
  2. Das et al., 1986
  3. Das et al., 1987
  4. Dominski, 2003
  5. Garber et al., 1994
  6. Jensen et al., 1998
  7. Jones and Kadonaga, 2000
  1. Matunis et al., 1993
  2. McNamara-Schroeder et al., 2001
  3. Mount and Salz, 2000
  4. Mount and Steitz, 1981
  5. Saluz et al., 1983
  6. Saluz et al., 1988
  7. Saluz et al., 1988
  1. Spikes and Bingham, 1992
  2. Takada et al., 2000
  3. Trivedi et al., 1996
  4. Wang and Stumph, 1995
  5. Wang and Stumph, 1998
  6. Wang et al., 1996
  7. Wooley et al., 1982
Abstract
  1. Harding et al., 2002
Review
  1. Lindsley and Zimm, 1992
  1. Tarn and Steitz, 1997
Other
  1. Das, 1996.12.6
  2. FlyBase Genome Annotators, 2002-2003
  1. FlyBase, 1992-
  2. Mount, 2000.5
  1. Mount, 2000.5.30



Send comments to us at flybase-help AT morgan.harvard.edu
FlyBase-NG uses Argos: A Replicable Genome infOrmation System
Run on computer cuttlefish.bio.indiana.edu