- Base ruler
- No additional information available.
- Cytologic band
- Cytological bands on the polytene chromosomes
- DNA sequence
- No additional information available.
- Gene Model
- Gene and mRNA (transcript) features (annotation DB ; Chado)
- Gene span
- Gene span features (annotation DB ; Chado)
- mRNA
- Protein coding sequence (CDS or translation; annotation DB ; Chado)
- CDS
- Protein coding sequence (CDS or translation; annotation DB ; Chado)
- intron
- intron
- 5prime UTR
- five_prime_UTR
- 3prime UTR
- three_prime_UTR
- Pseudogene
- No additional information available.
- tRNA
- These are tRNA predictions made using Sean Eddy's tRNAscan program.
- Non-coding RNAs
- Non-coding RNAs: ncRNA snoRNA snRNA miscRNA
- Natural transposon
- Natural transposon (annotation DB ; Chado)
- Transgene insertion site
- Transgene insertion site (annotation DB ; Chado)
- polyA_site
- polyA_site (annotation DB ; Chado)
- point_mutation
- point_mutation (annotation DB ; Chado)
- protein_binding_site
- protein_binding_site (annotation DB ; Chado)
- rescue_fragment
- rescue_fragment (annotation DB ; Chado)
- mature_peptide
- mature_peptide (annotation DB ; Chado)
- signal_peptide
- signal_peptide (annotation DB ; Chado)
- enhancer
- enhancer (annotation DB ; Chado)
- aberration_junction
- aberration_junction (annotation DB ; Chado)
- regulatory_region
- regulatory_region (annotation DB ; Chado)
- sequence_variant
- sequence_variant (annotation DB ; Chado)
- DNA / RNA motif
- DNA_motif and RNA_motif (annotation DB ; Chado)
- Ortholog
- Orthologous_region
- Syntenic region
- Syntenic_region
- Promoter prediction
- Transcription promoter prediction (annotation DB ; Chado)
- Processed transcript
- processed_transcript (annotation DB ; Chado)
- Protein BLAST alignment
- protein from BLAST alignments (annotation DB ; Chado)
- Repeat region
- repeat_region (annotation DB ; Chado)
- Genscan prediction
- Genscan (gene prediction) (annotation DB ; Chado)
- Genie prediction
- PieceGenie (gene prediction) (annotation DB ; Chado)
- fgenesh prediction
- match_fgenesh (gene prediction) (annotation DB ; Chado)
- HDP prediction
- HDP (annotation DB ; Chado)
- RNAiHDP prediction
- RNAiHDP (annotation DB ; Chado)
- tRNAscan prediction
- tRNAscan (tRNA prediction) (annotation DB ; Chado)
- Transposon prediction
- Transposon prediction (annotation DB ; Chado)
- promoter
- promoter
- repeat_runner_seg
- repeat_runner_seg
- repeatmasker
- repeatmasker
- blastx:aa_SP.hyp.dros
- blastx:aa_SP.hyp.dros
- blastx:aa_SP.real.dros
- blastx:aa_SP.real.dros
- blastx:aa_SPTR.dros
- blastx:aa_SPTR.dros
- blastx:aa_SPTR.insect
- blastx:aa_SPTR.insect
- blastx:aa_SPTR.othinv
- blastx:aa_SPTR.othinv
- blastx:aa_SPTR.othvert
- blastx:aa_SPTR.othvert
- blastx:aa_SPTR.plant
- blastx:aa_SPTR.plant
- blastx:aa_SPTR.primate
- blastx:aa_SPTR.primate
- blastx:aa_SPTR.rodent
- blastx:aa_SPTR.rodent
- blastx:aa_SPTR.worm
- blastx:aa_SPTR.worm
- blastx:aa_SPTR.yeast
- blastx:aa_SPTR.yeast
- blastx:aa_TR.real.dros
- blastx:aa_TR.real.dros
- tblastx:na_dbEST.insect
- tblastx:na_dbEST.insect
- tblastx:na_unigene.rodent
- tblastx:na_unigene.rodent
- sim4:na_DGC.dros
- sim4:na_DGC.dros
- sim4:na_EST.all_nr.dros
- sim4:na_EST.all_nr.dros
- sim4:na_cDNA.dros
- sim4:na_cDNA.dros
- sim4:na_gadfly.dros.RELEASE2
- sim4:na_gadfly.dros.RELEASE2
- sim4:na_gb.dros
- sim4:na_gb.dros
- sim4:na_pe.dros
- sim4:na_pe.dros
- Affy Oligo
- oligonucleotide (annotation DB ; Chado)
- cDNA + EST
- cDNA_clone and EST (annotation DB ; Chado)
- Blast hit
- BLAST alignment hit
- Tiling BAC
- BAC (annotation DB ; Chado)
- GenBank Scaffold
- golden_path segment (annotation DB ; Chado)
- Other breakpoints (cytol.)
- Other breakpoints (cytology mapped)
- Deleted segments (cytol.)
- Deleted segments (cytology mapped)
- Duplicated segments (cytol.)
- Duplicated segments (cytology mapped)
- Inversion breakpoints (cytol.)
- Inversion breakpoints (cytology mapped)
- Translocations & Transpositions (cytol.)
- Translocation & Transposition breakpoints (cytology mapped)
- Transgene insertion (cytol.)
- Chromosomal Insertion (cytologically mapped; CytoSearch DB)
- Gene (recomb. only)
- Genes mapped by cytology/recombination data only (possible orphans; cytologically mapped; CytoSearch DB)
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