FlyBase Archive server: last updated November 2004
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FlyBase Genome Overview: D. pseudoobscura
Release 1.0, Nov 2004

NOTE: "Chromosome U" is an unordered collection of contigs that have not been located to a chromosome or ultracontig. These are artificially collected as "chromosome U" for display. Locations on U are not useful between contigs.

Showing 30 Mbp from 2, positions 1 to 30,000,000

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GeneMap
Syntenic_region:syntenic_block:59 2:829377..1054193 Syntenic_region:syntenic_block:58 2:1065051..1115767 Syntenic_region:syntenic_block:57 2:1120511..1550861 Syntenic_region:syntenic_block:55 2:1551747..1552496 Syntenic_region:syntenic_block:751 2:1557656..1562242 Syntenic_region:syntenic_block:750 2:1569082..1781964 Syntenic_region:syntenic_block:749 2:1784912..1816649 Syntenic_region:syntenic_block:748 2:1838932..2433912 Syntenic_region:syntenic_block:746 2:2442105..2563947 Syntenic_region:syntenic_block:745 2:2566547..2612800 Syntenic_region:syntenic_block:1078 2:2637612..3022138 Syntenic_region:syntenic_block:1081 2:3022540..3090007 Syntenic_region:syntenic_block:1085 2:3097249..3227143 Syntenic_region:syntenic_block:1087 2:3228678..3305000 Syntenic_region:syntenic_block:1088 2:3326898..3575316 Syntenic_region:syntenic_block:1089 2:3578966..3579263 Syntenic_region:syntenic_block:1090 2:3579703..3590954 Syntenic_region:syntenic_block:1091 2:3603625..3614504 Syntenic_region:syntenic_block:1205 2:3629233..3647296 Syntenic_region:syntenic_block:1206 2:3669309..3714856 Syntenic_region:syntenic_block:1207 2:3715953..4067303 Syntenic_region:syntenic_block:1208 2:4068388..4091589 Syntenic_region:syntenic_block:1209 2:4111394..4137688 Syntenic_region:syntenic_block:1210 2:4157026..4188655 Syntenic_region:syntenic_block:1191 2:4210273..4532797 Syntenic_region:syntenic_block:1193 2:4612232..4892983 Syntenic_region:syntenic_block:1195 2:4897591..4958040 Syntenic_region:syntenic_block:1197 2:4958470..5236725 Syntenic_region:syntenic_block:1199 2:5249743..5383816 Syntenic_region:syntenic_block:1201 2:5383913..5487557 Syntenic_region:syntenic_block:1203 2:5488485..5508309 Syntenic_region:syntenic_block:1204 2:5508503..5579831 Syntenic_region:syntenic_block:218 2:5602215..5688309 Syntenic_region:syntenic_block:219 2:5689530..5693745 Syntenic_region:syntenic_block:220 2:5689530..5737501 Syntenic_region:syntenic_block:221 2:5739067..5945507 Syntenic_region:syntenic_block:222 2:5947323..6034806 Syntenic_region:syntenic_block:23 2:6095411..6269513 Syntenic_region:syntenic_block:20 2:6270067..6340433 Syntenic_region:syntenic_block:17 2:6279638..6341150 Syntenic_region:syntenic_block:14 2:6384211..6686794 Syntenic_region:syntenic_block:11 2:6687095..6743789 Syntenic_region:syntenic_block:7 2:6747705..6891605 Syntenic_region:syntenic_block:5 2:6900232..7211045 Syntenic_region:syntenic_block:1108 2:7239197..7311979 Syntenic_region:syntenic_block:587 2:7361988..7372113 Syntenic_region:syntenic_block:141 2:7384445..7471402 Syntenic_region:syntenic_block:139 2:7486586..7492363 Syntenic_region:syntenic_block:137 2:7499713..7522883 Syntenic_region:syntenic_block:134 2:7531166..7590396 Syntenic_region:syntenic_block:31 2:7657491..7772179 Syntenic_region:syntenic_block:30 2:7797049..7805422 Syntenic_region:syntenic_block:29 2:7807688..7809175 Syntenic_region:syntenic_block:28 2:7810828..7830288 Syntenic_region:syntenic_block:27 2:7882297..8313488 Syntenic_region:syntenic_block:26 2:8314010..8316871 Syntenic_region:syntenic_block:25 2:8317582..8366471 Syntenic_region:syntenic_block:24 2:8367021..8589355 Syntenic_region:syntenic_block:1106 2:8592240..8652087 Syntenic_region:syntenic_block:1105 2:8652943..8694380 Syntenic_region:syntenic_block:159 2:8698672..8730389 Syntenic_region:syntenic_block:157 2:8731824..9011420 Syntenic_region:syntenic_block:156 2:9028741..9407608 Syntenic_region:syntenic_block:153 2:9412774..9418465 Syntenic_region:syntenic_block:150 2:9487633..9658052 Syntenic_region:syntenic_block:149 2:9662113..9715716 Syntenic_region:syntenic_block:148 2:9718856..9734803 Syntenic_region:syntenic_block:146 2:9788621..9852920 Syntenic_region:syntenic_block:145 2:9857323..9921137 Syntenic_region:syntenic_block:1212 2:9937946..9968252 Syntenic_region:syntenic_block:1213 2:9981899..10021992 Syntenic_region:syntenic_block:1214 2:10026548..10033364 Syntenic_region:syntenic_block:1215 2:10036713..10126729 Syntenic_region:syntenic_block:1216 2:10128236..10331803 Syntenic_region:syntenic_block:1217 2:10346725..10543531 Syntenic_region:syntenic_block:1218 2:10548823..10613859 Syntenic_region:syntenic_block:1219 2:10614380..10646309 Syntenic_region:syntenic_block:1220 2:10649077..10753907 Syntenic_region:syntenic_block:188 2:10791148..10844039 Syntenic_region:syntenic_block:189 2:10852185..10963863 Syntenic_region:syntenic_block:190 2:10964894..11602908 Syntenic_region:syntenic_block:191 2:11605375..12030073 Syntenic_region:syntenic_block:192 2:12031963..12178984 Syntenic_region:syntenic_block:666 2:12225565..12281810 Syntenic_region:syntenic_block:668 2:12284337..12314020 Syntenic_region:syntenic_block:670 2:12318195..12323836 Syntenic_region:syntenic_block:672 2:12348217..12391324 Syntenic_region:syntenic_block:674 2:12389119..12391303 Syntenic_region:syntenic_block:677 2:12395971..12396204 Syntenic_region:syntenic_block:679 2:12400091..12467721 Syntenic_region:syntenic_block:682 2:12465621..12480822 Syntenic_region:syntenic_block:699 2:12504354..12540982 Syntenic_region:syntenic_block:700 2:12541477..12742507 Syntenic_region:syntenic_block:701 2:12763426..12916824 Syntenic_region:syntenic_block:702 2:12927952..12943057 Syntenic_region:syntenic_block:703 2:12944490..13074642 Syntenic_region:syntenic_block:704 2:13089270..13240229 Syntenic_region:syntenic_block:705 2:13241824..13243080 Syntenic_region:syntenic_block:707 2:13252500..13674344 Syntenic_region:syntenic_block:708 2:13697832..13705275 Syntenic_region:syntenic_block:709 2:13709218..13837194 Syntenic_region:syntenic_block:716 2:13833367..13837176 Syntenic_region:syntenic_block:717 2:13841183..13874631 Syntenic_region:syntenic_block:719 2:13880357..13954086 Syntenic_region:syntenic_block:722 2:13966587..13987739 Syntenic_region:syntenic_block:725 2:13989428..14013575 Syntenic_region:syntenic_block:728 2:14014498..14037506 Syntenic_region:syntenic_block:730 2:14039188..14080055 Syntenic_region:syntenic_block:732 2:14080639..14085841 Syntenic_region:syntenic_block:735 2:14086938..14189277 Syntenic_region:syntenic_block:738 2:14191682..14202217 Syntenic_region:syntenic_block:752 2:14202298..14562942 Syntenic_region:syntenic_block:754 2:14564232..14641429 Syntenic_region:syntenic_block:755 2:14646314..14658800 Syntenic_region:syntenic_block:756 2:14659292..14919235 Syntenic_region:syntenic_block:757 2:14921777..14925217 Syntenic_region:syntenic_block:758 2:14928531..15242226 Syntenic_region:syntenic_block:762 2:15246647..15468261 Syntenic_region:syntenic_block:763 2:15485624..15536310 Syntenic_region:syntenic_block:764 2:15546404..15602696 Syntenic_region:syntenic_block:776 2:15604895..16068088 Syntenic_region:syntenic_block:777 2:16075616..16084282 Syntenic_region:syntenic_block:1223 2:16115549..16134568 Syntenic_region:syntenic_block:1222 2:16136479..16345448 Syntenic_region:syntenic_block:1221 2:16356053..16416132 Syntenic_region:syntenic_block:1030 2:16417305..16448536 Syntenic_region:syntenic_block:1029 2:16449016..16450672 Syntenic_region:syntenic_block:1028 2:16450896..16452185 Syntenic_region:syntenic_block:1026 2:16456775..16458436 Syntenic_region:syntenic_block:1023 2:16460532..16471927 Syntenic_region:syntenic_block:1020 2:16475464..16623831 Syntenic_region:syntenic_block:1019 2:16625460..16898869 Syntenic_region:syntenic_block:1018 2:16907025..16994574 Syntenic_region:syntenic_block:1017 2:16995425..17004630 Syntenic_region:syntenic_block:693 2:17146612..17255513 Syntenic_region:syntenic_block:694 2:17241000..17397756 Syntenic_region:syntenic_block:695 2:17398091..17860397 Syntenic_region:syntenic_block:696 2:17863837..17942097 Syntenic_region:syntenic_block:697 2:17951407..17963426 Syntenic_region:syntenic_block:487 2:17965435..18099828 Syntenic_region:syntenic_block:793 2:18103099..18168299 Syntenic_region:syntenic_block:42 2:18217582..18251788 Syntenic_region:syntenic_block:44 2:18253961..18259018 Syntenic_region:syntenic_block:46 2:18286148..18303797 Syntenic_region:syntenic_block:154 2:18370919..18658038 Syntenic_region:syntenic_block:151 2:18664037..18954667 Syntenic_region:syntenic_block:37 2:19024088..19299062 Syntenic_region:syntenic_block:38 2:19303751..19329590 Syntenic_region:syntenic_block:39 2:19335553..19364196 Syntenic_region:syntenic_block:41 2:19364740..20167090 Syntenic_region:syntenic_block:43 2:20150346..20310516 Syntenic_region:syntenic_block:45 2:20170787..20455017 Syntenic_region:syntenic_block:47 2:20455667..20524852 Syntenic_region:syntenic_block:48 2:20534889..20588542 Syntenic_region:syntenic_block:516 2:20588895..20600859 Syntenic_region:syntenic_block:518 2:20601657..20605208 Syntenic_region:syntenic_block:520 2:20605210..20967337 Syntenic_region:syntenic_block:523 2:20967783..21146384 Syntenic_region:syntenic_block:526 2:21148192..21289487 Syntenic_region:syntenic_block:467 2:21306805..21323997 Syntenic_region:syntenic_block:471 2:21329996..21378714 Syntenic_region:syntenic_block:472 2:21380610..21392763 Syntenic_region:syntenic_block:474 2:21393235..21407979 Syntenic_region:syntenic_block:476 2:21425664..21459628 Syntenic_region:syntenic_block:479 2:21509346..22159972 Syntenic_region:syntenic_block:481 2:22163566..22201918 Syntenic_region:syntenic_block:420 2:22202898..22241117 Syntenic_region:syntenic_block:421 2:22244976..22260446 Syntenic_region:syntenic_block:422 2:22263028..22474131 Syntenic_region:syntenic_block:423 2:22477007..22930492 Syntenic_region:syntenic_block:424 2:22931059..23078054 Syntenic_region:syntenic_block:425 2:23084679..23093331 Syntenic_region:syntenic_block:426 2:23093481..23308098 Syntenic_region:syntenic_block:427 2:23312545..23320412 Syntenic_region:syntenic_block:428 2:23322665..23575906 Syntenic_region:syntenic_block:429 2:23602222..23622980 Syntenic_region:syntenic_block:452 2:23627761..23710812 Syntenic_region:syntenic_block:453 2:23722264..23914540 Syntenic_region:syntenic_block:454 2:23936477..23985725 Syntenic_region:syntenic_block:455 2:24042255..24086643 Syntenic_region:syntenic_block:457 2:24127272..24160394 Syntenic_region:syntenic_block:458 2:24162131..24165420 Syntenic_region:syntenic_block:460 2:24168729..24379475 Syntenic_region:syntenic_block:461 2:24411705..24462859 Syntenic_region:syntenic_block:1010 2:24596379..24814249 Syntenic_region:syntenic_block:1009 2:25232199..25235060 Syntenic_region:syntenic_block:1008 2:25295129..25378801 Syntenic_region:syntenic_block:1007 2:25380272..25391697 Syntenic_region:syntenic_block:1005 2:25389254..25459061 Syntenic_region:syntenic_block:1002 2:25459870..25573421 Syntenic_region:syntenic_block:1165 2:25579857..25614358 Syntenic_region:syntenic_block:1163 2:25594079..25594636 Syntenic_region:syntenic_block:1164 2:25594088..25594504 Syntenic_region:syntenic_block:1162 2:25621300..25766506 Syntenic_region:syntenic_block:1161 2:25767879..25772469 Syntenic_region:syntenic_block:1159 2:25780987..25784367 Syntenic_region:syntenic_block:1157 2:25789315..25879072 Syntenic_region:syntenic_block:1155 2:25908294..25933921 Syntenic_region:syntenic_block:1153 2:25936670..25977505 Syntenic_region:syntenic_block:1200 2:25995694..26164993 Syntenic_region:syntenic_block:1198 2:26176790..26185715 Syntenic_region:syntenic_block:1196 2:26185994..26230732 Syntenic_region:syntenic_block:1192 2:26231922..26233214 Syntenic_region:syntenic_block:1190 2:26231922..26545336 Syntenic_region:syntenic_block:1202 2:26414263..26414508 Syntenic_region:syntenic_block:586 2:26573920..26668074 Syntenic_region:syntenic_block:9 2:26691039..26693440 Syntenic_region:syntenic_block:534 2:26739060..26851046 Syntenic_region:syntenic_block:1112 2:26902637..27055297 Syntenic_region:syntenic_block:1114 2:27057196..27111848 Syntenic_region:syntenic_block:1117 2:27057292..27216740 Syntenic_region:syntenic_block:1121 2:27218571..27292468 Syntenic_region:syntenic_block:1124 2:27295392..27306561 Syntenic_region:syntenic_block:969 2:27418132..27468993 Syntenic_region:syntenic_block:967 2:27470477..27850486 Syntenic_region:syntenic_block:187 2:27854215..27883209 Syntenic_region:syntenic_block:186 2:27886414..27914900 Syntenic_region:syntenic_block:124 2:27918371..28002782 Syntenic_region:syntenic_block:122 2:28003339..28043522 Syntenic_region:syntenic_block:578 2:28253216..28273018 Syntenic_region:syntenic_block:576 2:28362954..28532997 Syntenic_region:syntenic_block:107 2:28579083..28579202 Syntenic_region:syntenic_block:1041 2:28603545..28667624 Syntenic_region:syntenic_block:375 2:28816505..29074619 Syntenic_region:syntenic_block:376 2:29074804..29076594 Syntenic_region:syntenic_block:378 2:29076972..29097692 Syntenic_region:syntenic_block:380 2:29097814..29103177 Syntenic_region:syntenic_block:381 2:29103959..29173940 Syntenic_region:syntenic_block:615 2:29237163..29241003 Syntenic_region:syntenic_block:617 2:29242999..29245830 Syntenic_region:syntenic_block:623 2:29243011..30593487 Syntenic_region:syntenic_block:618 2:29246017..29287638 Syntenic_region:syntenic_block:619 2:29288042..29368059 Syntenic_region:syntenic_block:620 2:29369864..30139371 Scaffold:Contig143_Contig447 2:1555515..2614210 Scaffold:Contig446_Contig3289 2:2614196..4204577 Scaffold:Contig3323_Contig6140 2:4204676..5599224 Scaffold:Contig837_Contig5345 2:5599196..6087268 Scaffold:Contig8255_Contig717 2:6087367..7232798 Scaffold:Contig1258_Contig6825 2:7232772..7330650 Scaffold:Contig642_Contig7937 2:7330672..7375399 Scaffold:Contig152_Contig617 2:7375428..7595031 Scaffold:Contig2803_Contig3631 2:7595101..8589709 Scaffold:Contig1109_Contig2766 2:8589752..9932238 Scaffold:Contig1160_Contig3376 2:9932337..12195339 Scaffold:Contig7891_Contig7492A 2:12195397..16108133 Scaffold:Contig138_Contig706 2:16108204..17033180 Scaffold:Contig3447_Contig3977 2:17033139..17964720 Scaffold:Contig6945_Contig5842 2:17964743..18102892 Scaffold:Contig3553_Contig6240 2:18102927..18175708 Scaffold:Contig4971_Contig7717A 2:18175740..18313683 Scaffold:Contig3286_Contig7811A 2:18313784..18994569 Scaffold:Contig4374_Contig4847 2:18994637..21293195 Scaffold:Contig3681_Contig434 2:21293295..24470240 Scaffold:Contig4245_Contig4172 2:24470127..24490556 Scaffold:Contig6581_Contig6381 2:24490594..25980826 Scaffold:Contig268_Contig6582 2:25980865..26558372 Scaffold:Contig390_Contig267 2:26558319..26671448 Scaffold:Contig1049_Contig1050 2:26671357..26694009 Scaffold:Contig4208_Contig6223 2:26694048..26733961 Scaffold:Contig3147_Contig3098 2:26733984..26893525 Scaffold:Contig3070_Contig6431 2:26893512..27359586 Scaffold:Contig534_Contig6747 2:27359650..27850532 Scaffold:Contig3676_Contig1180 2:27850435..27916997 Scaffold:Contig3773_Contig4795 2:27917048..28150605 Scaffold:Contig1961_Contig2233 2:28150672..28209787 Scaffold:Contig2565_Contig7289 2:28209833..28233342 Scaffold:Contig1986_Contig2394 2:28233443..28283311 Scaffold:Contig2395_Contig6282 2:28283383..28565747 Scaffold:Contig4616_Contig6281 2:28565761..28589310 Scaffold:Contig1252_Contig6587 2:28589398..28701858 Scaffold:Contig6586_Contig7863 2:28701959..29230453 Scaffold:Contig1193_Contig1472 2:29230457..30680786

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Synteny features:
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Genome reagents:
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Adapted from GBrowse of the Generic Model Organism Database Project.
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Generic genome browser version 1.6